The detailed information of tRNA gene sequence


Sequence ID>SRA1001978
Genome IDSRR001308.160687
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 275
End posion on genome 198
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
nnnnnctgtc
tRNA gene sequence 
AGTCCACTAGCTCAACGGGCAGAGCGATTGACTTCAAATCAGTAGGTTGGCGGTTCGAAT
CCGTCGTGGTTTCCTCCAa
Downstream region at tRNA end position 
ataagcgaaa
Secondary structure (Cloverleaf model)
>SRA1001978	SeC	TCA
                   c      CCAa ataagcgaaa
                     A - T
                     G - C
                     T   C
                     C   T
                     C   T
                     A - T
                     C - G          G C
                    T     G T G C T     C
      C A A        A        + +         T
    G       C T C G       G G T T C     A
    G       | | | |                 G A
    G       G A G C
      C A          G     AGGTTGGC
                    A - T
                    T + G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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