The detailed information of tRNA gene sequence


Sequence ID>SRA1002000
Genome IDSRR001308.172925
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 99
End posion on genome 8
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
taccgaaagg
tRNA gene sequence 
GGTGAGGTGCCTGAGTGGCCGAAAGGAACGGTTTGCTAAACCGTCGTACGGGTTAAACTG
TACCGAGGGTTCGAATCCCTCCCTCACCGCCA
Downstream region at tRNA end position 
aaaaattnnn
Secondary structure (Cloverleaf model)
>SRA1002000	Ser	GCT
                   g      GCCA aaaaattnnn
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G T C C       G A G G G     C
    G         | | |                 T T
    C       A A G G
      C G A        A     CGTACGGGTTAAACTGTACC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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