The detailed information of tRNA gene sequence


Sequence ID>SRA1002099
Genome IDSRR001308.240540
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 160
End posion on genome 252
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aggttccagt
tRNA gene sequence 
GGAGCGATGTCCGAGCGGTTGAAGGAGCACGCCTGGAAAGTGTGTATACGGCTAAACCCC
GTATCGAGGGTTCGAATCCCTCTCGCTCCGCCA
Downstream region at tRNA end position 
gctttacccc
Secondary structure (Cloverleaf model)
>SRA1002099	Ser	GGA
                   t      GCCA gctttacccc
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C
                     A - T          T A
                    T     C T C C C     A
      C G A        G      | | | | |     G
    G       G C C T       G A G G G     C
    G         | | |                 T T
    T       A G G A
      T G A        G     TATACGGCTAAACCCCGTATC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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