The detailed information of tRNA gene sequence


Sequence ID>SRA1002113
Genome IDSRR001308.247666
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 154
End posion on genome 78
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
gtgcagtgtt
tRNA gene sequence 
GGGGAGTTAGTTCAGCTGGTTAGAACGCCGGCCTGTCACGCCGGAGGTCAGGGGTTCAAG
TCCCCTACTCCTCGCAA
Downstream region at tRNA end position 
aagaagcccc
Secondary structure (Cloverleaf model)
>SRA1002113	Asp	GTC
                   t      GCAA aagaagcccc
                     G - C
                     G + T
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A          T G
                    T     T C C C C     A
      C G A        A      | | | | |     A
    T       C T T G       A G G G G     C
    G       | | | |                 T T
    G       G A A C
      T T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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