The detailed information of tRNA gene sequence


Sequence ID>SRA1002256
Genome IDSRR001308.331280
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 154
End posion on genome 246
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cggggaatgc
tRNA gene sequence 
GGAGAGATGTCCGAGTGGTTGAAGGAGCACGCCTGGAAAGTGTGTAAGCGGCTTAACCCC
GCTTCGCGGGTTCGAATCCCGCTCTCTCCGCCA
Downstream region at tRNA end position 
gttttgannn
Secondary structure (Cloverleaf model)
>SRA1002256	Ser	GGA
                   c      GCCA gttttgannn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C G C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G C G G G     C
    G         | | |                 T T
    T       A G G A
      T G A        G     TAAGCGGCTTAACCCCGCTTC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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