The detailed information of tRNA gene sequence


Sequence ID>SRA1002303
Genome IDSRR001308.363473
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 169
End posion on genome 267
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
aaacagtcgt
tRNA gene sequence 
GGGAGTGTGACCGGGACTGGTGCCCGGCCCAGTCTTCAAAACTGGTGAGGCTGGCCTAAC
CTCCGGCTTGGCGGGTTCGATTCCCGTACGCTCCCGCCA
Downstream region at tRNA end position 
gcgnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002303	SeC	TCA
                   t      GCCA gcgnnnnnnn
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     G - C
                     T - A          T T
                    G     T G C C C     A
      C A G        A      + | | | |     G
    T       G G C C       G C G G G     C
    G       | | | |                 T T
    G       C C G G
      T G C        C     TGAGGCTGGCCTAACCTCCGGCTTG
                    C - G
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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