The detailed information of tRNA gene sequence


Sequence ID>SRA1002330
Genome IDSRR001308.377657
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 186
End posion on genome 275
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
cggcccgttc
tRNA gene sequence 
GGAGAGATGCCTGAGAGGCCGAAAGGAACAGTTTGCTAAACTGTCGTACTGGCAACGGTA
CCGAGGGTTCGAATCCCTCTCTCTCCGCAA
Downstream region at tRNA end position 
acacttgaaa
Secondary structure (Cloverleaf model)
>SRA1002330	Ser	GCT
                   c      GCAA acacttgaaa
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      A G A        G      | | | | |     G
    G       G T C C       G A G G G     C
    G         | | |                 T T
    C       A A G G
      C G A        A     CGTACTGGCAACGGTACC
                    A - T
                    C - G
                    A - T
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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