The detailed information of tRNA gene sequence


Sequence ID>SRA1002411
Genome IDSRR001323.72759
Search identical group
Phylum/ClassMetagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Species
Start position on genome 12
End posion on genome 105
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
caaataaaat
tRNA gene sequence 
GGAGAGGTGGCTGAGTGGTCGAAAGCGGTCGCCTGCTAAGCGATTAAGTGCCCATAAAGG
TGCTTCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Downstream region at tRNA end position 
gtttagagnn
Secondary structure (Cloverleaf model)
>SRA1002411	Ser	GCT
                   t      GCCA gtttagagnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G T C G       G A G G G     C
    G         | | |                 T T
    T       A A G C
      C G A        G     TAAGTGCCCATAAAGGTGCTTC
                    G + T
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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