The detailed information of tRNA gene sequence


Sequence ID>SRA1002420
Genome IDSRR001323.96970
Search identical group
Phylum/ClassMetagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Species
Start position on genome 114
End posion on genome 25
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tttagtaggt
tRNA gene sequence 
TGAGGGGTGACCGAGTGGTTTAAGGTGGCGGTCTTGAAAACCGTTTTCGCTTTTTGAGCG
AACGTGGGTTCGAATCCCACCCCTCCGCCAg
Downstream region at tRNA end position 
tcggaaggtg
Secondary structure (Cloverleaf model)
>SRA1002420	Ser	TGA
                   t      CCAg tcggaaggtg
                     T + G
                     G - C
                     A   C
                     G + T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C C A       G T G G G     C
    G         | | |                 T T
    T       A G G T
      T T A        G     TTTCGCTTTTTGAGCGAAC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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