The detailed information of tRNA gene sequence


Sequence ID>SRA1002557
Genome IDSRR001663.3723
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 80
End posion on genome 4
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tattggctgc
tRNA gene sequence 
CGCGGGGTAGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGGAGTTCAAA
TCTCCCCCCCGCCACCA
Downstream region at tRNA end position 
aatnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002557	Met	CAT
                   c      ACCA aatnnnnnnn
                     C   C
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C C C T C     A
      T G A        A      | | | | |     A
    C       C G A G       G G G A G     C
    T       | | | |                 T T
    G       G C T C
      G T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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