The detailed information of tRNA gene sequence


Sequence ID>SRA1002558
Genome IDSRR001663.4225
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 9
End posion on genome 95
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
nncaacacgt
tRNA gene sequence 
GCCCGCGTGGTGGAATGGTAGACACAAGAGACTTAAAATCTCTGGGCTTAGTAGGCCGTG
CCGGTTCGAGTCCGGCCGCGGGTACCA
Downstream region at tRNA end position 
cgtgttgggt
Secondary structure (Cloverleaf model)
>SRA1002558	Leu	TAA
                   t      ACCA cgtgttgggt
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C          T G
                    T     C G G C C     A
      T A A        G      | | | | |     G
    G       G G T G       G C C G G     C
    G         | | |                 T T
    T       A C A C
      A G          A     GGGCTTAGTAGGCCGT
                    A - T
                    G - C
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T A A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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