The detailed information of tRNA gene sequence


Sequence ID>SRA1002559
Genome IDSRR001663.4308
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 116
End posion on genome 40
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
nnnnnnnnnn
tRNA gene sequence 
CGGGCTATGGCGCAGTCTGGTAGCGCGTCCGTCTGGGGGACGGAAGGTCGCAGGTTCAAG
TCCTGCTAGCCCGACCA
Downstream region at tRNA end position 
aattcaaaaa
Secondary structure (Cloverleaf model)
>SRA1002559	Pro	GGG
                   n      ACCA aattcaaaaa
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     C G T C C     A
      T G A        G      | | | | |     A
    C       C G C G       G C A G G     C
    T       | | | |                 T T
    G       G C G C
      G T A        G     AGGTC
                    T - A
                    C - G
                    C - G
                    G - C
                    T - A
                  C       G
                  T       G
                    G G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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