The detailed information of tRNA gene sequence


Sequence ID>SRA1002561
Genome IDSRR001663.14546
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 73
End posion on genome 2
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tttgcattcg
tRNA gene sequence 
GGGCGATTAGCACAGTGGTAGCGCACTTCCTTCACACGGAAGGGGTCACTGGTTCGAATC
CAGTATCGCCCAtnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002561	Val	CAC
                   g      Atnn nnnnnnnnnn
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T
                     T - A          T A
                    T     T G A C C     A
        G A        A      | | | | |     G
      T     C A C G       A C T G G     C
      G     |   | |                 T T
      G     G C G C
        T A        A     GGGTC
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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