The detailed information of tRNA gene sequence


Sequence ID>SRA1002562
Genome IDSRR001663.15766
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 6
End posion on genome 87
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
nnnnnggttc
tRNA gene sequence 
GGGTCGGTGCCCGAGTGGTTAATGGGGGCGGACTGTAAATCCGCTGGCTCTGCCTACGTT
GGTTCAAATCCAACCCGGCCCAtcc
Downstream region at tRNA end position 
cccacacgcc
Secondary structure (Cloverleaf model)
>SRA1002562	Tyr	GTA
                   c      Atcc cccacacgcc
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     G - C
                     G - C          T A
                    T     C A A C C     A
      T G A        G      | | | | |     A
    G       G C C C       G T T G G     C
    G       + | | |                 T T
    T       T G G G
      T A A        G     TGGCTCTGCCTAC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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