The detailed information of tRNA gene sequence


Sequence ID>SRA1002563
Genome IDSRR001663.17467
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 22
End posion on genome 96
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ccagatctag
tRNA gene sequence 
GTCCCCATCGTCTAGCCTGGCCTAGGACGCCAGACTTTCACTCTGGTAACACGGGTTCAA
ATCCCGTTGGGGACGtat
Downstream region at tRNA end position 
aaaaaagcct
Secondary structure (Cloverleaf model)
>SRA1002563	Glu	TTC
                   g      Gtat aaaaaagcct
                     G - C
                     T - A
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     T G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       A C G G G     C
  G         + | | |                 T T
  G         G G A C
    C C T A        G     TAAC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       C
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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