The detailed information of tRNA gene sequence


Sequence ID>SRA1002567
Genome IDSRR001663.34904
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 4
End posion on genome 91
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnnnnnncat
tRNA gene sequence 
GGAGAGGTGGTCGAGTGGTTTATGGCTCTGGTCTTGAAAACCAGCGTGTCTGCAAGGGCA
CCGTCGGTTCGAATCCGACCCTCTCCGCtc
Downstream region at tRNA end position 
tataagcaag
Secondary structure (Cloverleaf model)
>SRA1002567	Ser	TGA
                   t      GCtc tataagcaag
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A G C C     A
      T G A        G      | | | | |     G
    G       G C T G       G T C G G     C
    G       + | + |                 T T
    T       T G G C
      T T A        T     CGTGTCTGCAAGGGCACC
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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