The detailed information of tRNA gene sequence


Sequence ID>SRA1002577
Genome IDSRR001663.56456
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 84
End posion on genome 8
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
nnnnnnnnnn
tRNA gene sequence 
CGGAGCGTAGCGCAGCCTGGTAGCGCACTATACTGGGGGTGTAGGGGTCGTGGGTTCGAA
TCCCGCCGCTCCGACCA
Downstream region at tRNA end position 
ataaaatnnn
Secondary structure (Cloverleaf model)
>SRA1002577	Pro	GGG
                   n      ACCA ataaaatnnn
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | + | | |     G
    C       C G C G       G T G G G     C
    T       | | | |                 T T
    G       G C G C
      G T A        A     GGGTC
                    C - G
                    T - A
                    A - T
                    T + G
                    A - T
                  C       G
                  T       G
                    G G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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