The detailed information of tRNA gene sequence


Sequence ID>SRA1002579
Genome IDSRR001663.61355
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 37
End posion on genome 113
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tcatcgcctT
tRNA gene sequence 
GCGCCGTTAGTTCAGTTGGTAGAACGCAGGTCTCCAAAACCTGATGTCGGGGGTTCAAGT
CCTCCACGGCGCGTCC
Downstream region at tRNA end position 
gatgannnnn
Secondary structure (Cloverleaf model)
>SRA1002579	Trp	CCA
                   T      GTCC gatgannnnn
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A          T G
                    T     C C T C C     A
      T G A        A      | | + | |     A
    T       C T T G       G G G G G     C
    G       | | | |                 T T
    G       G A A C
      T A          G     ATGTC
                    C - G
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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