The detailed information of tRNA gene sequence


Sequence ID>SRA1002580
Genome IDSRR001663.63376
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 26
End posion on genome 110
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
aaataagaaT
tRNA gene sequence 
GGGAAAGTGGCTGAGCGGTTCAAGGCGACAGACTGTAAATCTGCTGACTTTCGTCATCGC
AGGTTCGAATCCTGCCTTTCCCATat
Downstream region at tRNA end position 
ttttttannn
Secondary structure (Cloverleaf model)
>SRA1002580	Tyr	GTA
                   T      ATat ttttttannn
                     G - C
                     G - C
                     G - C
                     A - T
                     A - T
                     A - T
                     G - C          T A
                    T     C G T C C     A
      C G A        G      | | | | |     G
    G       G T C G       G C A G G     C
    G         + | |                 T T
    T       A G G C
      T C A        G     TGACTTTCGTCATC
                    A   C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    G T A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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