The detailed information of tRNA gene sequence


Sequence ID>SRA1002593
Genome IDSRR001663.93651
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 91
End posion on genome 18
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
nnaagagcca
tRNA gene sequence 
CGGGGTGTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGAA
TCCTGTCACCCCGAtgc
Downstream region at tRNA end position 
ccgagacgtc
Secondary structure (Cloverleaf model)
>SRA1002593	Pro	TGG
                   a      Atgc ccgagacgtc
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     T G T C C     A
      T G A        A      + | | | |     G
    T       C G C G       G C A G G     C
    T       | | | |                 T T
    G       G C G C
      G T A        G     ATGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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