The detailed information of tRNA gene sequence


Sequence ID>SRA1002596
Genome IDSRR001663.100800
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 93
End posion on genome 4
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tctaccgcac
tRNA gene sequence 
GGAGGGGTGACCGAGTTGGTCTAAGGAGCGCGATTGGAAATCGCGTGTGCCTCAAAAGGG
CACCGTGGGTTCGAATCCCACCCTCTCCGCtc
Downstream region at tRNA end position 
cnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002596	Ser	GGA
                   c      GCtc cnnnnnnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     G + T
                     G - C
                     G - C          T A
                    T     C A C C C     A
    T T G A        G      | | | | |     G
  G         G C C A       G T G G G     C
  G           | |                   T T
  T         A G G A
    C T A          G     TGTGCCTCAAAAGGGCACC
                    C - G
                    G - C
                    C - G
                    G - C
                    A - T
                  T       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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