The detailed information of tRNA gene sequence


Sequence ID>SRA1002604
Genome IDSRR001663.126371
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 95
End posion on genome 19
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
ctacctttta
tRNA gene sequence 
TGGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGAGTTCGAG
TCTCGTCACTCTCGCCA
Downstream region at tRNA end position 
ttatcttaaa
Secondary structure (Cloverleaf model)
>SRA1002604	Asp	GTC
                   a      GCCA ttatcttaaa
                     T   C
                     G + T
                     G - C
                     G + T
                     G - C
                     T - A
                     G - C          T G
                    T     T G C T C     A
      T G A        A      + | | | |     G
    T       C T C G       G C G A G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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