The detailed information of tRNA gene sequence


Sequence ID>SRA1002609
Genome IDSRR001663.140837
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 27
End posion on genome 100
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gagatcagtc
tRNA gene sequence 
GGTGACATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAAGGTCCCGCGTTCGAT
CCGCGGTGTCGCCTnnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002609	Phe	GAA
                   c      Tnnn nnnnnnnnnn
                     G - C
                     G - C
                     T + G
                     G - C
                     A - T
                     C - G
                     A - T          C T
                    T     G G C G C     A
      T G A        A      | | | | |     G
    T       C T C G       C C G C G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AAGGTC
                    T - A
                    T - A
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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