The detailed information of tRNA gene sequence


Sequence ID>SRA1002610
Genome IDSRR001663.141028
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 77
End posion on genome 4
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tggcctctga
tRNA gene sequence 
GGGGCTGTAGCTCAGCTGGATAGAGCGACGGTTTCCTAAACCGTAGGTCGTGGGTTCGAG
TCCCGCCAGCCCCGtct
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002610	Arg	CCT
                   a      Gtct nnnnnnnnnn
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T G
                    T     C G C C C     A
      C G A        A      | + | | |     G
    T       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      A T A        G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    C C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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