The detailed information of tRNA gene sequence


Sequence ID>SRA1002611
Genome IDSRR001663.142381
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 29
End posion on genome 101
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
taaatttgtt
tRNA gene sequence 
GCCGATGTAGCTCAGCTGGTAGAGCAACGCTTTCGTAAAGCGTGGGTCGCCTGTTCAAGT
CAGGTCATCGGCTttn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002611	Thr	CGT
                   t      Tttn nnnnnnnnnn
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     T - A
                     G - C          T G
                    T     T G G A C     A
      C G A        A      + | | | |     A
    T       C T C G       G C C T G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GGGTC
                    A - T
                    C - G
                    G - C
                    C - G
                    T - A
                  T       A
                  T       A
                    C G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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