The detailed information of tRNA gene sequence


Sequence ID>SRA1002630
Genome IDSRR001663.199468
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 27
End posion on genome 100
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
attcggtgtt
tRNA gene sequence 
GGGGGTTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAGT
CTCCTAACCTCCACtg
Downstream region at tRNA end position 
accgnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002630	Ala	TGC
                   t      ACtg accgnnnnnn
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     T - A          T G
                    T     T C C T C     A
      T G A        A      | | | | |     G
    T       C T C G       A G G A G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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