The detailed information of tRNA gene sequence


Sequence ID>SRA1002634
Genome IDSRR001663.208683
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 11
End posion on genome 87
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ggcttccaga
tRNA gene sequence 
GGCGGTATAGCTCAGTTGGTTAGAGCAGCGGAATCATAATCCGCGTGTCCGGGGTTCAAG
TCCCTGTGCCGCTACCA
Downstream region at tRNA end position 
aacttcttca
Secondary structure (Cloverleaf model)
>SRA1002634	Met	CAT
                   a      ACCA aacttcttca
                     G + T
                     G - C
                     C - G
                     G - C
                     G - C
                     T + G
                     A - T          T G
                    T     G T C C C     A
      T G A        A      | + | | |     A
    T       C T C G       C G G G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        A     GTGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  A       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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