The detailed information of tRNA gene sequence


Sequence ID>SRA1002636
Genome IDSRR001663.209778
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 6
End posion on genome 79
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
nnnnnttaat
tRNA gene sequence 
GGCGCCTTGGCCGAGCGGCTAGGCAGAGGTCTGCAAAACCTTGTACGGCGGTTCGAATCC
GCCAGGCGCCTCAA
Downstream region at tRNA end position 
ccaaaccctc
Secondary structure (Cloverleaf model)
>SRA1002636	Cys	GCA
                   t      TCAA ccaaaccctc
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     C C G C C     A
        G A        G      | | | | |     G
      C     G C C G       G G C G G     C
      G       | | |                 T T
      G     A G G C
        C T        A     GTAC
                    G + T
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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