The detailed information of tRNA gene sequence


Sequence ID>SRA1002647
Genome IDSRR001663.246413
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 31
End posion on genome 102
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
atcaattaat
tRNA gene sequence 
GCCGGCTTAGCTCAGTGGTAGAGCAGCGCTTTTGTAAAGCGAAGGTCATCGGTTCAAATC
CGTTAGCCGGCTttt
Downstream region at tRNA end position 
aaggnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002647	Thr	TGT
                   t      Tttt aaggnnnnnn
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A          T A
                    T     T T G C C     A
        G A        A      |   | | |     A
      T     C T C G       A T C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     AGGTC
                    G   A
                    C - G
                    G - C
                    C - G
                    T - A
                  T       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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