The detailed information of tRNA gene sequence


Sequence ID>SRA1002648
Genome IDSRR001663.259817
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 108
End posion on genome 33
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
nnagtccccT
tRNA gene sequence 
GGGCCATTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCCCTGGTTCAAG
TCCAGGATGGCCCATtc
Downstream region at tRNA end position 
ggtggttggg
Secondary structure (Cloverleaf model)
>SRA1002648	Ile	GAT
                   T      ATtc ggtggttggg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     A - T
                     T - A          T G
                    T     G G A C C     A
      G G A        A      | | | | |     A
    T       C T C G       C C T G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    C - G
                    A - T
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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