The detailed information of tRNA gene sequence


Sequence ID>SRA1002649
Genome IDSRR001663.261356
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 95
End posion on genome 19
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gcacgccagt
tRNA gene sequence 
CGGGGCGTAGCGCAGCCTGGTAGCGCGACGGTTTTGGGTACCGTAGGTCGCAAGTTCGAA
TCTTGCCGTCCCGACCA
Downstream region at tRNA end position 
ttaaaaatta
Secondary structure (Cloverleaf model)
>SRA1002649	Pro	TGG
                   t      ACCA ttaaaaatta
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T
                     C - G
                     G - C          T A
                    T     C G T T C     A
      C G A        A      | | | | |     G
    C       C G C G       G C A A G     C
    T       | | | |                 T T
    G       G C G C
      G T A        G     AGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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