The detailed information of tRNA gene sequence


Sequence ID>SRA1002658
Genome IDSRR001663.299653
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 17
End posion on genome 106
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gattcgctga
tRNA gene sequence 
GGAGACGTCGCATAGTCCGGCCGAGTGCACCACCCTGCTAAGGTGGAGTCCCCGCAAGGG
GACCGAGGGTTCAAATCCCTCCGTCTCCGCgt
Downstream region at tRNA end position 
ttaggtaaac
Secondary structure (Cloverleaf model)
>SRA1002658	Ser	GCT
                   a      GCgt ttaggtaaac
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     C T C C C     A
    C T G A        C      | | | | |     A
  C         T A C G       G A G G G     C
  G         + | | |                 T T
  G         G T G C
    C C G A        A     AGTCCCCGCAAGGGGACC
                    C - G
                    C - G
                    A - T
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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