The detailed information of tRNA gene sequence


Sequence ID>SRA1002660
Genome IDSRR001663.306523
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 94
End posion on genome 19
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
gtttttttgc
tRNA gene sequence 
GGGTGATTAGCTCAGTTGGTAGAGCGCTTCGTTTACACCGAAGATGTCAGGAGTTCGAGT
CTCTTATCACCCACCA
Downstream region at tRNA end position 
tactcccttt
Secondary structure (Cloverleaf model)
>SRA1002660	Val	TAC
                   c      ACCA tactcccttt
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     T - A          T G
                    T     T T C T C     A
      T G A        A      | + | | |     G
    T       C T C G       A G G A G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    T - A
                    T - A
                    C - G
                    G - C
                  T       C
                  T       A
                    T A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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