The detailed information of tRNA gene sequence


Sequence ID>SRA1002667
Genome IDSRR001663.326123
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 108
End posion on genome 33
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ncaccttttt
tRNA gene sequence 
AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGCTGTGGGTTCGAGT
CCCTCCGCTCCTGCCA
Downstream region at tRNA end position 
cgatttaaga
Secondary structure (Cloverleaf model)
>SRA1002667	Trp	CCA
                   t      GCCA cgatttaaga
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     G - C          T G
                    T     C T C C C     A
      T A A        A      |   | | |     G
    T       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     GGGCT
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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