The detailed information of tRNA gene sequence


Sequence ID>SRA1002673
Genome IDSRR001663.342031
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 3
End posion on genome 80
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
nnnnnnnagT
tRNA gene sequence 
GGGCATGTAGTCTCAGTTGGATAGAGCATCAGATTCCGGTTCTGAGGGTACGGGGGTTCG
AGTCCCTCCATGCTCGTat
Downstream region at tRNA end position 
taatgcgtaa
Secondary structure (Cloverleaf model)
>SRA1002673	Arg	CCG
                   T      GTat taatgcgtaa
                     G - C
                     G + T
                     G - C
                     C - G
                     A - T
                     T - A
                     G - C          T G
                    T     C T C C C     A
    T G A C        A      | + | | |     G
  T         T C T G       G G G G G     C
  G         +   + |                 T T
  G         G A G C
    A T A          A     GGGTAC
                    T - A
                    C - G
                    A - T
                    G - C
                    A - T
                  T       T
                  T       G
                    C C G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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