The detailed information of tRNA gene sequence


Sequence ID>SRA1002675
Genome IDSRR001663.348017
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 97
End posion on genome 10
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
aaagtgcctt
tRNA gene sequence 
GGAGAGGTGGTCGAGTGGTTTATGGCTCTGGTCTTGAAAACCAGCGTGTCTGCAAGGGCA
CCGTCGGTTCGAATCCGACCCTCTCCGCtc
Downstream region at tRNA end position 
aataagtnnn
Secondary structure (Cloverleaf model)
>SRA1002675	Ser	TGA
                   t      GCtc aataagtnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A G C C     A
      T G A        G      | | | | |     G
    G       G C T G       G T C G G     C
    G       + | + |                 T T
    T       T G G C
      T T A        T     CGTGTCTGCAAGGGCACC
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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