The detailed information of tRNA gene sequence


Sequence ID>SRA1002680
Genome IDSRR001663.362971
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 19
End posion on genome 90
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tttgcgttcg
tRNA gene sequence 
GGGCGATTAGCACAGTGGTAGCGCACTTCCTTCACACGGAAGGGGTCACTGGTTCGAATC
CAGTATCGCCCAtta
Downstream region at tRNA end position 
aatcttttaa
Secondary structure (Cloverleaf model)
>SRA1002680	Val	CAC
                   g      Atta aatcttttaa
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T
                     T - A          T A
                    T     T G A C C     A
        G A        A      | | | | |     G
      T     C A C G       A C T G G     C
      G     |   | |                 T T
      G     G C G C
        T A        A     GGGTC
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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