The detailed information of tRNA gene sequence


Sequence ID>W1810235943
Genome IDPPFX01000018
Search identical group
Phylum/ClassThermodesulfobacteriota
SpeciesGeothermobacter hydrogeniphilus HR-1 [PPFX]
Start position on genome 43531
End posion on genome 43436
Amino Acid Sec
Anticodon TCA
Upstream region at tRNA start position 
ccgaatttaa
tRNA gene sequence 
GGGAGTAGTTCGTAGGCTGGTGCCGCGCCCGGTCTTCAAAACCGGTGGGGGGCGTGATCC
GTCCCTGGTGGGTTCGATTCCCATCTACTCCCGCCA
Downstream region at tRNA end position 
accctcctta
Secondary structure (Cloverleaf model)
>W1810235943	Sec	TCA
                   a      GCCA accctcctta
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     A - T
                     G - C          T T
                    T     T A C C C     A
      C G G        T      + | | | |     G
    T       A T G C       G T G G G     C
    G         + | |                 T T
    G       C G C G
      T G C        C     TGGGGGGCGTGATCCGTCCCTG
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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