The detailed information of tRNA gene sequence


Sequence ID>SRA1004160
Genome IDSRR002328.177282
Search identical group
Phylum/ClassThe Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Species
Start position on genome 25
End posion on genome 117
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
cccgccccac
tRNA gene sequence 
GGAGCTGTGACCGAGTGGCCGAAGGTGCTCCCCTGCTAAGGGAGTATGTGGGCAAAACCT
GCATCGAGGGTTCGAATCCCTCCGGCTCCGCCA
Downstream region at tRNA end position 
acgttgccca
Secondary structure (Cloverleaf model)
>SRA1004160	Ser	GCT
                   c      GCCA acgttgccca
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     T + G
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C A       G A G G G     C
    G         | | |                 T T
    C       A G G T
      C G A        G     TATGTGGGCAAAACCTGCATC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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