The detailed information of tRNA gene sequence


Sequence ID>W1810321723
Genome IDPUBZ01000079
Search identical group
Phylum/ClassChloroflexota
SpeciesHerpetosiphon llansteffanensis CA052B [PUBZ]
Start position on genome 38389
End posion on genome 38485
Amino Acid Sec
Anticodon TCA
Upstream region at tRNA start position 
tgttgcaatt
tRNA gene sequence 
GGGAGTACATGGGGTCTGGTGGCCTCGTCAGTCTTCAAAATTGGTCGGCGCTATGACGAA
TAGCGTTGGTGTGTTCGATTCGCACGTGCTCCCGCCA
Downstream region at tRNA end position 
gagccagatg
Secondary structure (Cloverleaf model)
>W1810321723	Sec	TCA
                   t      GCCA gagccagatg
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     A - T
                     C - G          T T
                    A     C A C G C     A
      T C T        T      | | | + |     G
    G       G G G G       G T G T G     C
    G       | | + |                 T T
    T       C C T C
      G G          G     TCGGCGCTATGACGAATAGCGTTG
                    T + G
                    C - G
                    A - T
                    G + T
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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