The detailed information of tRNA gene sequence


Sequence ID>SRA1010800
Genome IDSRR020492.176163
Search identical group
Phylum/ClassMicrobial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
Species
Start position on genome 125
End posion on genome 223
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
ttatactggg
tRNA gene sequence 
GGGAGCGGATGGGAGCCTGGTGGCCTCCGCGGACTTCAAATCCGTAGTGGTGTCGCGAAA
GCGGCGCTGGGTGGGTTCGATTCCCACACGTTCCCGCCA
Downstream region at tRNA end position 
catataactc
Secondary structure (Cloverleaf model)
>SRA1010800	SeC	TCA
                   g      GCCA catataactc
                     G - C
                     G - C
                     G - C
                     A - T
                     G + T
                     C - G
                     G - C
                     G   A          T T
                    A     C A C C C     A
      C C G        T      | | | | |     G
    T       A G G G       G T G G G     C
    G         | + |                 T T
    G       C C T C
      T G G        C     AGTGGTGTCGCGAAAGCGGCGCTGG
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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