The detailed information of tRNA gene sequence


Sequence ID>A243000103
Genome IDAP028634
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrofollis japonicus YC29 [AP028634]
Start position on genome 1550106
End posion on genome 1550212
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
gtggaaggat
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGTCGAAGGCGGCGGGCTGCAGACCCGTTGATCCCGGGTTCAAA
TCCCGGCCCCGGCTCCA
Downstream region at tRNA end position 
cattacaaca
Secondary structure (Cloverleaf model)
>A243000103	Cys	GCA
                   t      TCCA cattacaaca
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       C C G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    G C A
intron: position=38, length=30 (in A-loop)
TGACAGCTCTGAGGACCGCCCATCGCGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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