The detailed information of tRNA gene sequence


Sequence ID>A243000106
Genome IDAP028634
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrofollis japonicus YC29 [AP028634]
Start position on genome 1896658
End posion on genome 1896766
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gagcttaggc
tRNA gene sequence 
GGGCCCGTCGTCTAGCTTGGTAGGATGCGGGGTTCGGGACCCCGTGGTCCCGGGTTCAAA
TCCCGGCGGGCCCACCA
Downstream region at tRNA end position 
ctacttctcc
Secondary structure (Cloverleaf model)
>A243000106	Pro	CGG
                   c      ACCA ctacttctcc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     A
    T       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  T*      A
                  T       G
                    C G G
intron: position=33, length=32 (in A-loop)
ACCCGGCTCCCGCACATGGGGCCGAGCCCGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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