The detailed information of tRNA gene sequence


Sequence ID>A243000224
Genome IDCP026994
Search identical group
Phylum/ClassNitrososphaerota
SpeciesNitrosopumilus oxyclinae HCE1 [CP026994]
Start position on genome 1102868
End posion on genome 1102966
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
caatttagtt
tRNA gene sequence 
GGACCGGTCGTCTAGTTTGGTTTGGATGACGCACTCACACTGCGTAGGTCGTGGGTTCAA
ATCCCATTCGGTCCACCA
Downstream region at tRNA end position 
tttcatttat
Secondary structure (Cloverleaf model)
>A243000224	Val	CAC
                   t      ACCA tttcatttat
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G + T          T A
                    T     T A C C C     A
    T T G A        C      + | | | |     A
  T         T C T G       G T G G G     C
  G         + | | +                 T T
  G         G G A T
    T T T          G     AGGTC
                    A - T
                    C - G
                    G - C
                    C - G
                    A - T
                  C       C
                  T       A
                    C A C
intron: position=45, length=21
AGGAAATTACTTTCCCGCAAA
Intron
Comment/Decision
Genome/Seq. Info.-

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