The detailed information of tRNA gene sequence


Sequence ID>A243000316
Genome IDCP031148
Search identical group
Phylum/ClassMethanobacteriota
SpeciesHaloplanus rubicundus CBA1112 [CP031148]
Start position on genome 122749
End posion on genome 122854
Amino Acid Ile2
Anticodon CAT
Upstream region at tRNA start position 
acgggaacga
tRNA gene sequence 
GGGCCCTTAGCTTAGTCTGGTTAAAGCCCCCGGCTCATAACCGGGTGATCGCTGGTTCGA
ATCCGGCAGGGCCCAtct
Downstream region at tRNA end position 
gacgaagact
Secondary structure (Cloverleaf model)
>A243000316	Ile2	CAT
                   a      Atct gacgaagact
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     C G G C C     A
    C T G A        A      | | + | |     G
  T         T T C G       G C T G G     C
  G         | | | |                 T T
  G         A A G C
    T T A          C     TGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=31 (in A-loop)
GTGGGCGCGATACGCGTCGCGGGCATGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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