The detailed information of tRNA gene sequence


Sequence ID>A243000345
Genome IDCP031156
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera prunae Ron 12/II [CP031156]
Start position on genome 1353621
End posion on genome 1353531
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
tattttcatT
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGCCAAGTATGCGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGCGGCATtg
Downstream region at tRNA end position 
attttatttc
Secondary structure (Cloverleaf model)
>A243000345	Glu	TTC
                   T      ATtg attttatttc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    C C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
intron: position=21, length=14 (in D-loop)
TGCTCTGCGCCGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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