The detailed information of tRNA gene sequence


Sequence ID>A243000562
Genome IDCP054707
Search identical group
Phylum/ClassMethanobacteriota
SpeciesHalarchaeum sp. CBA1220 [CP054707]
Start position on genome 77869
End posion on genome 77750
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
aactgagtga
tRNA gene sequence 
GCTCGGTTGGTGTAGTCCGGCCAATCATGTTGGCCTTTCGAGCCGACGACCAGGGTTCAA
ATCCCTGACCGAGCAtcc
Downstream region at tRNA end position 
atttcctcac
Secondary structure (Cloverleaf model)
>A243000562	Glu	TTC
                   a      Atcc atttcctcac
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C
                     T - A          T A
                    T     G T C C C     A
    C T G A        G      | | | | |     A
  C         T G T G       C A G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    T - A
                    T + G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T T C
intron: position=38, length=45 (in A-loop)
GGAAACCGCAGCCGGCCCGGCGTAAACTGGCTGGGTTTCGAAGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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