The detailed information of tRNA gene sequence


Sequence ID>SRA1013435
Genome IDSRR023396.35382
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 66
End posion on genome 153
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ggtttttttg
tRNA gene sequence 
GTAGAGGTGTCGGAGTGGCTTATCGAGCAGCCTTGGAAAGGCTGTGTAGGGCATGTCCCT
ACCGCGGGTTCGAATCCCGCCCTCTCCGttt
Downstream region at tRNA end position 
gcgggacgag
Secondary structure (Cloverleaf model)
>SRA1013435	Ser	GGA
                   g      Gttt gcgggacgag
                     G - C
                     T   C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     G
    G       G G C T       G C G G G     C
    G       + | | |                 T T
    C       T C G A
      T T A        G     TGTAGGGCATGTCCCTACC
                    C - G
                    A - T
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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