The detailed information of tRNA gene sequence


Sequence ID>SRA1013499
Genome IDSRR023396.128161
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 42
End posion on genome 117
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ttgttggctt
tRNA gene sequence 
GCCGGGGTGGCCGAGTGGTTCAGGCGGTGGGCTGCAGACCCGCTCTACGTGGGTTCGATT
CCCACCCCCGGCTCCA
Downstream region at tRNA end position 
atctgcaaaa
Secondary structure (Cloverleaf model)
>SRA1013499	Cys	GCA
                   t      TCCA atctgcaaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T T
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      T C          G     TCTAC
                    G - C
                    T + G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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