The detailed information of tRNA gene sequence


Sequence ID>SRA1013539
Genome IDSRR023396.183047
Search identical group
Phylum/ClassBrazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095)
Species
Start position on genome 114
End posion on genome 39
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
cgcttgaagt
tRNA gene sequence 
AGGAGTGTAGCTCAGTTGGGAGAGCAGCGGTCTCCAAAACCGCCGGTCGGGGGTTCGAGT
CCTCCCACTCCTGCCA
Downstream region at tRNA end position 
ggttgggccg
Secondary structure (Cloverleaf model)
>SRA1013539	Trp	CCA
                   t      GCCA ggttgggccg
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     G - C          T G
                    T     C C T C C     A
      T G A        A      | | + | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      G A          A     CGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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